https://catalogue.portal.dev.gdi.lu/catalog.n3
type: PagedCollection
items per page: 100
total items: 14

COVID-19 dataset with individual level data
type: Dataset
creator: Agent
  identifier: CSC - IT Center for Science (Finland)
  name: https://ror.org/04m8m1253
description: This dataset contains individual level data from 42193 individuals from COVID Population 12 Italy, Subgroup 2.
issued: 2024-11-08T04:00:00+00:00
language: en
modified: 2024-11-08T05:00:00+00:00
provenance: ProvenanceStatement
publisher: CSC - IT Center for Science (Finland)
contact point: Kind
  fn: Dylan Spalding
theme: HEAL

COVID-19 dataset of aggregated data.
type: Dataset
creator: CSC - IT Center for Science (Finland)
description: This dataset contains aggregated data from 42193 individuals from COVID Population 12 Italy, Subgroup 2.
issued: 2024-11-08T04:00:00+00:00
language: en
modified: 2024-11-08T05:00:00+00:00
provenance: ProvenanceStatement
publisher: CSC - IT Center for Science (Finland)
contact point: Kind
  fn: Dylan Spalding
theme: HEAL

SYNTHETIC Norwegian Colorectal Cancer genomic dataset generated in EOSC4Cancer
type: Dataset
description: SYNTHETIC This dataset contains 10 tumor and normal pairs synthetic WGS data of colorectal cancer that were simulated in a standard format of Illumina paired-end reads. NEAT read simulator (version 3.0, https://github.com/zstephens/neat-genreads) is utilized to synthetize these 10 pairs tumor and normal WGS data. In the procedure of data generation, simulated parameters (i.e., sequencing error statistics, read fragment length distribution and GC% coverage bias) are learned from data models provided by NEAT. The average sequencing depth for tumor and normal samples aims to reach around 110X and 60X, respectively. For generation of synthetic normal WGS data per each sample, a germline variant profile from a real patient is down-sampled randomly, which includes 50% germline variants of such a patient. It is then mixed together with an in silico germline variant profile that is modelled randomly using an average mutation rate (0.001), finally constituting a full germline profile for normal synthetic WGS data. For generation of synthetic tumor WGS data per each sample, a pre-defined somatic short variant profile (SNVs+Indels) learn from a real CRC patient is added to the germline variant profile used for creating normal synthetic WGS data of the same patient, which is utilized to produce simulated sequences. Neither copy number profile nor structural variation profile is introduced into the tumor synthetic WGS data. Tumor content and ploidy are assumed to be 100% and 2.
issued: 2024-04-30T00:00:00+00:00
modified: 2025-12-13T11:15:17.987361
provenance: ProvenanceStatement
publisher: University of Oslo
contact point: Kind
  fn: Sen Zhao
  has UID: Sen-Zhao-7
keyword: colorectal_tumor
keyword: ngs
keyword: normal_tumor_pair
keyword: synthetic
keyword: wgs
theme: Colorectal cancer

CKAN
type: Catalog
language: en
modified: 2025-12-15T11:45:37.906495
dataset: SYNTHETIC Norwegian Colorectal Cancer genomic dataset generated in EOSC4Cancer
dataset: GDI-LU-D-T0001
dataset: GDI COVID 19 synthetic dataset (Population 11 Finland, Subgroup 2)

Health-RI
type: Agent

LNDS
type: Agent

GDI-LU-D-T0001
type: Dataset
description: Colorectal cancer dataset
issued: 2024-11-01T13:06:27+00:00
modified: 2024-11-01T13:06:27+00:00
provenance: ProvenanceStatement
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N.bam.bai/bai
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N.bam/bam
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L001_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L001_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L002_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L002_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L003_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L003_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L004_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L004_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_germline_golden.vcf.gz.tbi/vcf
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_germline_golden.vcf.gz/vcf
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T.bam.bai/bai
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T.bam/bam
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L001_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L001_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L002_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L002_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L003_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L003_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L004_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L004_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_germline_golden.vcf.gz.tbi/vcf
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_germline_golden.vcf.gz/vcf

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N.bam.bai/bai
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N.bam.bai in schema gdi, formatted as bai.
format: bai
issued: 2025-12-15T11:45:28.226713
modified: 2025-12-15T11:45:28.223724
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N.bam/bam
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N.bam in schema gdi, formatted as bam.
format: bam
issued: 2025-12-15T11:45:28.446837
modified: 2025-12-15T11:45:28.445397
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L001_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L001_R1_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:28.688159
modified: 2025-12-15T11:45:28.686399
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L001_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L001_R2_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:29.270694
modified: 2025-12-15T11:45:29.269129
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L002_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L002_R1_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:29.747666
modified: 2025-12-15T11:45:29.745739
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L002_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L002_R2_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:30.118619
modified: 2025-12-15T11:45:30.116879
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L003_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L003_R1_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:30.450691
modified: 2025-12-15T11:45:30.448828
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L003_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L003_R2_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:30.942614
modified: 2025-12-15T11:45:30.940545
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L004_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L004_R1_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:31.660906
modified: 2025-12-15T11:45:31.658793
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L004_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L004_R2_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:31.990859
modified: 2025-12-15T11:45:31.988824
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_germline_golden.vcf.gz.tbi/vcf
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_germline_golden.vcf.gz.tbi in schema gdi, formatted as vcf.
format: vcf
issued: 2025-12-15T11:45:32.483987
modified: 2025-12-15T11:45:32.481755
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_germline_golden.vcf.gz/vcf
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_germline_golden.vcf.gz in schema gdi, formatted as vcf.
format: vcf
issued: 2025-12-15T11:45:32.945672
modified: 2025-12-15T11:45:32.943516
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T.bam.bai/bai
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T.bam.bai in schema gdi, formatted as bai.
format: bai
issued: 2025-12-15T11:45:33.331575
modified: 2025-12-15T11:45:33.329300
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T.bam/bam
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T.bam in schema gdi, formatted as bam.
format: bam
issued: 2025-12-15T11:45:33.834502
modified: 2025-12-15T11:45:33.832128
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L001_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L001_R1_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:34.170061
modified: 2025-12-15T11:45:34.167640
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L001_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L001_R2_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:34.678019
modified: 2025-12-15T11:45:34.675534
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L002_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L002_R1_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:35.009216
modified: 2025-12-15T11:45:35.006587
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L002_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L002_R2_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:35.402741
modified: 2025-12-15T11:45:35.400077
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L003_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L003_R1_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:35.723122
modified: 2025-12-15T11:45:35.720362
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L003_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L003_R2_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:36.106317
modified: 2025-12-15T11:45:36.102508
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L004_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L004_R1_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:36.503006
modified: 2025-12-15T11:45:36.499993
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L004_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L004_R2_001.fastq.gz in schema gdi, formatted as fastq.
format: fastq
issued: 2025-12-15T11:45:36.943989
modified: 2025-12-15T11:45:36.940915
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_germline_golden.vcf.gz.tbi/vcf
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_germline_golden.vcf.gz.tbi in schema gdi, formatted as vcf.
format: vcf
issued: 2025-12-15T11:45:37.406888
modified: 2025-12-15T11:45:37.403688
rights: RightsStatement

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_germline_golden.vcf.gz/vcf
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_germline_golden.vcf.gz in schema gdi, formatted as vcf.
format: vcf
issued: 2025-12-15T11:45:37.914783
modified: 2025-12-15T11:45:37.911507
rights: RightsStatement

COVID-19 GWAS and Allele Frequency Lookup Dataset with Population 12 (Italian) subset 1
type: Dataset
creator: BioData.pt
description: This dataset is being used as part of the GDI Milestone 8, containing VCFs and phenotypic data in CSV format about 41514 samples. The dataset consists only of synthetic data.
issued: 2024-07-07T11:11:11+00:00
language: en
modified: 2024-11-04T10:20:05+00:00
provenance: ProvenanceStatement
publisher: BioData.pt
contact point: Kind
  fn: BioData.pt Chief Technology Officer
  has UID: 02q7abn51
keyword: COVID
theme: HEAL

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 16.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 16 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:16.791607
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:16.787992
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a662c85e-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Phenotypes of the individuals.
type: Distribution
description: CSV file containing phenotypes in population 12 (ITA), sub1
issued: 2025-12-15T11:45:17.053598
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:17.051197
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-faca7026-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 10.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 10 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:17.334793
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:17.332285
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a52e055c-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 14.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 14 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:17.655926
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:17.653321
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a61127d8-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 18.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 18 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:17.895463
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:17.892757
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a6aed3c0-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 1.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 1 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:18.211100
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:18.207918
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-02157454-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 7.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 7 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:18.463568
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:18.460665
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a440c3b4-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 11.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 11 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:18.746266
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:18.743386
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a571dc5a-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 17.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 17 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:19.000170
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:18.997163
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a68b87a8-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 4.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 4 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:19.253336
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:19.250298
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a12943f4-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 6.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 6 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:19.491651
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:19.488527
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a37770a4-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 13.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 13 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:19.765184
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:19.761871
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a5e2c6e0-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 21.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 21 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:20.034168
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:20.030778
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a71afc6c-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 5.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 5 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:20.294255
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:20.290898
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a28f96bc-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome X.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome X in population 12 (ITA), sub1
issued: 2025-12-15T11:45:20.565088
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:20.561639
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-8c546148-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 19.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 19 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:20.817078
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:20.813213
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a6e64f6c-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 9.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 9 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:21.091286
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:21.087632
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a4c3a7ca-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 3.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 3 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:21.357948
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:21.354270
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-9fc06330-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 2.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 2 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:21.681664
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:21.677186
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-9e540dee-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 20.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 20 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:22.008787
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:22.004205
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a702ac48-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 15.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 15 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:22.323918
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:22.319426
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a63c2e7e-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 8.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 8 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:22.620965
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:22.616477
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a483c88a-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 22.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 22 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:22.907613
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:22.902847
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a72eb266-a1b5-11ef

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 12.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 12 in population 12 (ITA), sub1
issued: 2025-12-15T11:45:23.185458
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:23.180538
rights: RightsStatement
access URL: https://download.gdi.biodata.pt/files/GDIF-a5b23a66-a1b5-11ef

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
max typical age: 100
min typical age: 1
number of records: 10
number of unique individuals: 4
population coverage: This test dataset covers no real population.
access rights: RESTRICTED
creator: BSC
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
issued: 2025-01-29T11:11:11+00:00
language: en
modified: 2025-01-29T13:36:10+00:00
provenance: ProvenanceStatement
publisher: Health-RI
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
theme: HEAL

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
format: VCF
issued: 2025-12-15T11:30:05.407486
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:30:05.402528
rights: RightsStatement
access URL: https://healthri-acceptance.powerappsportals.com/en-US/Health-RI-data-request-form/

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
max typical age: 100
min typical age: 1
number of records: 10
number of unique individuals: 4
population coverage: This test dataset covers no real population.
access rights: PUBLIC
creator: BSC
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
issued: 2025-01-29T11:11:11+00:00
language: en
modified: 2025-01-29T13:36:10+00:00
provenance: ProvenanceStatement
publisher: Health-RI
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
theme: HEAL

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
max typical age: 100
min typical age: 1
number of records: 10
number of unique individuals: 4
population coverage: This test dataset covers no real population.
access rights: PUBLIC
creator: BSC
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
issued: 2025-01-29T11:11:11+00:00
language: en
modified: 2025-01-29T13:36:10+00:00
provenance: ProvenanceStatement
publisher: Health-RI
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
theme: HEAL

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
max typical age: 100
min typical age: 1
number of records: 10
number of unique individuals: 4
population coverage: This test dataset covers no real population.
access rights: PUBLIC
creator: BSC
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
issued: 2025-01-29T11:11:11+00:00
language: en
modified: 2025-01-29T13:36:10+00:00
provenance: ProvenanceStatement
publisher: Health-RI
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
theme: HEAL

This is test dataset
type: Dataset
applicable legislation: oj
access rights: PUBLIC
conforms to: 1MGCompliant
creator: Hans
description: This is a description
issued: 2025-12-15T11:45:05.618255
language: en
modified: 2025-12-15T11:45:05.618260
provenance: ProvenanceStatement
spatial: CZE
contact point: Kind
  fn: Hans
theme: HEAL

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
max typical age: 100
min typical age: 1
number of records: 10
number of unique individuals: 4
population coverage: This test dataset covers no real population.
access rights: PUBLIC
creator: BSC
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
issued: 2025-01-29T11:11:11+00:00
language: en
modified: 2025-01-29T13:36:10+00:00
provenance: ProvenanceStatement
publisher: Health-RI
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
theme: HEAL

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
format: VCF
issued: 2025-12-15T11:45:06.928583
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:06.923912
rights: RightsStatement
access URL: https://ega-archive.org/datasets/EGAD50000000276

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
format: VCF
issued: 2025-12-15T11:45:09.100493
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:09.095519
rights: RightsStatement
access URL: https://ega-archive.org/datasets/EGAD50000000276

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
format: VCF
issued: 2025-12-15T11:45:10.191020
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:10.186258
rights: RightsStatement
access URL: https://ega-archive.org/datasets/EGAD50000000276

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
format: VCF
issued: 2025-12-15T11:45:08.011216
license: https://creativecommons.org/licenses/by-sa/4.0/
modified: 2025-12-15T11:45:08.006503
rights: RightsStatement
access URL: https://ega-archive.org/datasets/EGAD50000000276

GDI COVID 19 synthetic dataset (Population 11 Finland, Subgroup 2)
type: Dataset
access rights: accessRights
creator: EGA
description: This dataset contains the pheno-clinical and genomic information of 42046 individuals from COVID Population 11 Finland, Subgroup 2. 2010 are affected by Phenotype 1, 2010 are affected by Phenotype 2, 188 are affected by Phenotype 1 and 2, and 37838 are control. The dataset also contains the information about the smoking habits of each individual.
issued: 2024-11-05T18:22:29+00:00
language: en
modified: 2024-11-07T15:28:57+00:00
provenance: ProvenanceStatement
publisher: EGA
contact point: Kind
  fn: EGAC00001000514
  has UID: EGAC00001000514
keyword: COVID
keyword: COVID-19
keyword: COVID19
keyword: ega
keyword: gdi
keyword: synthetic
theme: HEAL

COVID-19 GWAS and Allele Frequency Lookup Dataset for GDI MS 8
type: Dataset
creator: National Bioinformatics Infrastructure Sweden
description: This is the first part of the split 11 of the synthetic data dedicated for the GDI MS8
issued: 2024-07-07T11:11:11+00:00
language: en
modified: 2024-06-04T13:36:10+00:00
provenance: ProvenanceStatement
publisher: National Bioinformatics Infrastructure Sweden
contact point: Kind
  fn: Data Access Committee of NBIS
  has UID: 00enajs79
contact point: Kind
  fn: Data Access Committee of NBIS
  has UID: 00enajs79
keyword: COVID19
keyword: Smokers
theme: HEAL

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration.
issued: 2025-11-25T14:38:03.475069
issued: 2025-12-15T11:45:11.087127
license: cc-zero1.0
modified: 2025-11-25T14:38:03.469695
modified: 2025-12-15T11:45:11.083889
rights: RightsStatement
access URL: https://staging-download.gdi.nbis.se/dataset/GDI-MS8-COVID19.vcf
media type: text/vcard