CKAN
type: Catalog
language: en
modified: 2025-12-15T11:45:37.906495
dataset: GDI-LU-D-T0001
dataset: GDI COVID 19 synthetic dataset (Population 11 Finland, Subgroup 2)
dataset: SYNTHETIC Norwegian Colorectal Cancer genomic dataset generated in EOSC4Cancer

GDI-LU-D-T0001
type: Dataset
description: Colorectal cancer dataset
issued: 2024-11-01T13:06:27+00:00
modified: 2024-11-01T13:06:27+00:00
provenance: ProvenanceStatement
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N.bam.bai/bai
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N.bam/bam
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L001_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L001_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L002_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L002_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L003_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L003_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L004_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L004_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_germline_golden.vcf.gz.tbi/vcf
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_germline_golden.vcf.gz/vcf
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T.bam.bai/bai
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T.bam/bam
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L001_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L001_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L002_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L002_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L003_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L003_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L004_R1_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L004_R2_001.fastq.gz/fastq
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_germline_golden.vcf.gz.tbi/vcf
distribution: Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_germline_golden.vcf.gz/vcf

COVID-19 dataset of aggregated data.
type: Dataset
description: This dataset contains aggregated data from 42193 individuals from COVID Population 12 Italy, Subgroup 2.
issued: 2024-11-08T04:00:00+00:00
modified: 2024-11-08T05:00:00+00:00
language: en
theme: HEAL
provenance: ProvenanceStatement
contact point: Kind
  fn: Dylan Spalding
publisher: CSC - IT Center for Science (Finland)
creator: CSC - IT Center for Science (Finland)

COVID-19 dataset with individual level data
type: Dataset
description: This dataset contains individual level data from 42193 individuals from COVID Population 12 Italy, Subgroup 2.
issued: 2024-11-08T04:00:00+00:00
modified: 2024-11-08T05:00:00+00:00
language: en
theme: HEAL
provenance: ProvenanceStatement
contact point: Kind
  fn: Dylan Spalding
publisher: CSC - IT Center for Science (Finland)
creator: Agent
  name: https://ror.org/04m8m1253
  identifier: CSC - IT Center for Science (Finland)

COVID-19 GWAS and Allele Frequency Lookup Dataset with Population 12 (Italian) subset 1
type: Dataset
description: This dataset is being used as part of the GDI Milestone 8, containing VCFs and phenotypic data in CSV format about 41514 samples. The dataset consists only of synthetic data.
keyword: COVID
issued: 2024-07-07T11:11:11+00:00
modified: 2024-11-04T10:20:05+00:00
language: en
theme: HEAL
provenance: ProvenanceStatement
contact point: Kind
  fn: BioData.pt Chief Technology Officer
  has UID: 02q7abn51
publisher: BioData.pt
creator: BioData.pt

COVID-19 GWAS and Allele Frequency Lookup Dataset for GDI MS 8
type: Dataset
description: This is the first part of the split 11 of the synthetic data dedicated for the GDI MS8
keyword: COVID19
keyword: Smokers
issued: 2024-07-07T11:11:11+00:00
modified: 2024-06-04T13:36:10+00:00
language: en
theme: HEAL
provenance: ProvenanceStatement
contact point: Kind
  fn: Data Access Committee of NBIS
  has UID: 00enajs79
contact point: Kind
  fn: Data Access Committee of NBIS
  has UID: 00enajs79
publisher: National Bioinformatics Infrastructure Sweden
creator: National Bioinformatics Infrastructure Sweden

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
issued: 2025-01-29T11:11:11+00:00
modified: 2025-01-29T13:36:10+00:00
language: en
theme: HEAL
access rights: PUBLIC
provenance: ProvenanceStatement
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
publisher: Health-RI
creator: BSC
population coverage: This test dataset covers no real population.
min typical age: 1
max typical age: 100
number of records: 10
number of unique individuals: 4

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
issued: 2025-01-29T11:11:11+00:00
modified: 2025-01-29T13:36:10+00:00
language: en
theme: HEAL
access rights: PUBLIC
provenance: ProvenanceStatement
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
publisher: Health-RI
creator: BSC
population coverage: This test dataset covers no real population.
min typical age: 1
max typical age: 100
number of records: 10
number of unique individuals: 4

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
issued: 2025-01-29T11:11:11+00:00
modified: 2025-01-29T13:36:10+00:00
language: en
theme: HEAL
access rights: PUBLIC
provenance: ProvenanceStatement
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
publisher: Health-RI
creator: BSC
population coverage: This test dataset covers no real population.
min typical age: 1
max typical age: 100
number of records: 10
number of unique individuals: 4

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
issued: 2025-01-29T11:11:11+00:00
modified: 2025-01-29T13:36:10+00:00
language: en
theme: HEAL
access rights: PUBLIC
provenance: ProvenanceStatement
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
publisher: Health-RI
creator: BSC
population coverage: This test dataset covers no real population.
min typical age: 1
max typical age: 100
number of records: 10
number of unique individuals: 4

This is test dataset
type: Dataset
description: This is a description
issued: 2025-12-15T11:45:05.618255
modified: 2025-12-15T11:45:05.618260
language: en
theme: HEAL
conforms to: 1MGCompliant
access rights: PUBLIC
provenance: ProvenanceStatement
applicable legislation: oj
contact point: Kind
  fn: Hans
creator: Hans
spatial: CZE

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC
type: Dataset
description: The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG dataset. For each patient, two tumor samples at different time points and one healthy sample have been simulated. The cancer intra-tumor heterogeneity and evolution in the patients is depicted by simulating reads from tumor subclones separately and then mixing them according to their clonal proportions in each sample. For rapid use and transfer, only selected chromosomes have been generated for each patient. For Beacon queries, the following url can be used https://gdi-beacon-prototype.azurewebsites.net/api/datasets/EGAD50000000276
keyword: Cancer
keyword: Colorectal Cancer
keyword: Genomics
keyword: Synthetic Data
issued: 2025-01-29T11:11:11+00:00
modified: 2025-01-29T13:36:10+00:00
language: en
theme: HEAL
access rights: RESTRICTED
provenance: ProvenanceStatement
contact point: Kind
  fn: Servicedesk Health-RI
  has UID: 05wg1m734
publisher: Health-RI
creator: BSC
population coverage: This test dataset covers no real population.
min typical age: 1
max typical age: 100
number of records: 10
number of unique individuals: 4

GDI COVID 19 synthetic dataset (Population 11 Finland, Subgroup 2)
type: Dataset
description: This dataset contains the pheno-clinical and genomic information of 42046 individuals from COVID Population 11 Finland, Subgroup 2. 2010 are affected by Phenotype 1, 2010 are affected by Phenotype 2, 188 are affected by Phenotype 1 and 2, and 37838 are control. The dataset also contains the information about the smoking habits of each individual.
keyword: ega
keyword: gdi
keyword: synthetic
keyword: COVID19
keyword: COVID-19
keyword: COVID
issued: 2024-11-05T18:22:29+00:00
modified: 2024-11-07T15:28:57+00:00
language: en
theme: HEAL
access rights: accessRights
provenance: ProvenanceStatement
contact point: Kind
  fn: EGAC00001000514
  has UID: EGAC00001000514
publisher: EGA
creator: EGA

SYNTHETIC Norwegian Colorectal Cancer genomic dataset generated in EOSC4Cancer
type: Dataset
description: SYNTHETIC This dataset contains 10 tumor and normal pairs synthetic WGS data of colorectal cancer that were simulated in a standard format of Illumina paired-end reads. NEAT read simulator (version 3.0, https://github.com/zstephens/neat-genreads) is utilized to synthetize these 10 pairs tumor and normal WGS data. In the procedure of data generation, simulated parameters (i.e., sequencing error statistics, read fragment length distribution and GC% coverage bias) are learned from data models provided by NEAT. The average sequencing depth for tumor and normal samples aims to reach around 110X and 60X, respectively. For generation of synthetic normal WGS data per each sample, a germline variant profile from a real patient is down-sampled randomly, which includes 50% germline variants of such a patient. It is then mixed together with an in silico germline variant profile that is modelled randomly using an average mutation rate (0.001), finally constituting a full germline profile for normal synthetic WGS data. For generation of synthetic tumor WGS data per each sample, a pre-defined somatic short variant profile (SNVs+Indels) learn from a real CRC patient is added to the germline variant profile used for creating normal synthetic WGS data of the same patient, which is utilized to produce simulated sequences. Neither copy number profile nor structural variation profile is introduced into the tumor synthetic WGS data. Tumor content and ploidy are assumed to be 100% and 2.
keyword: colorectal_tumor
keyword: ngs
keyword: normal_tumor_pair
keyword: synthetic
keyword: wgs
issued: 2024-04-30T00:00:00+00:00
modified: 2025-12-13T11:15:17.987361
theme: Colorectal cancer
provenance: ProvenanceStatement
contact point: Kind
  fn: Sen Zhao
  has UID: Sen-Zhao-7
publisher: University of Oslo

https://catalogue.portal.dev.gdi.lu/catalog.xml
type: PagedCollection
total items: 14
items per page: 100

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L004_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L004_R2_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:31.990859
modified: 2025-12-15T11:45:31.988824

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T.bam/bam
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T.bam in schema gdi, formatted as bam.
rights: RightsStatement
format: bam
issued: 2025-12-15T11:45:33.834502
modified: 2025-12-15T11:45:33.832128

Health-RI
type: Agent

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L001_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L001_R2_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:34.678019
modified: 2025-12-15T11:45:34.675534

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 22.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 22 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a72eb266-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:22.907613
modified: 2025-12-15T11:45:22.902847

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://ega-archive.org/datasets/EGAD50000000276
rights: RightsStatement
format: VCF
issued: 2025-12-15T11:45:06.928583
modified: 2025-12-15T11:45:06.923912

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 16.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 16 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a662c85e-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:16.791607
modified: 2025-12-15T11:45:16.787992

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N.bam.bai/bai
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N.bam.bai in schema gdi, formatted as bai.
rights: RightsStatement
format: bai
issued: 2025-12-15T11:45:28.226713
modified: 2025-12-15T11:45:28.223724

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_germline_golden.vcf.gz.tbi/vcf
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_germline_golden.vcf.gz.tbi in schema gdi, formatted as vcf.
rights: RightsStatement
format: vcf
issued: 2025-12-15T11:45:32.483987
modified: 2025-12-15T11:45:32.481755

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://ega-archive.org/datasets/EGAD50000000276
rights: RightsStatement
format: VCF
issued: 2025-12-15T11:45:08.011216
modified: 2025-12-15T11:45:08.006503

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_germline_golden.vcf.gz/vcf
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_germline_golden.vcf.gz in schema gdi, formatted as vcf.
rights: RightsStatement
format: vcf
issued: 2025-12-15T11:45:32.945672
modified: 2025-12-15T11:45:32.943516

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 5.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 5 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a28f96bc-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:20.294255
modified: 2025-12-15T11:45:20.290898

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 11.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 11 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a571dc5a-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:18.746266
modified: 2025-12-15T11:45:18.743386

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L002_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L002_R2_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:30.118619
modified: 2025-12-15T11:45:30.116879

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 9.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 9 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a4c3a7ca-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:21.091286
modified: 2025-12-15T11:45:21.087632

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 1.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 1 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-02157454-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:18.211100
modified: 2025-12-15T11:45:18.207918

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N.bam/bam
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N.bam in schema gdi, formatted as bam.
rights: RightsStatement
format: bam
issued: 2025-12-15T11:45:28.446837
modified: 2025-12-15T11:45:28.445397

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 12.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 12 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a5b23a66-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:23.185458
modified: 2025-12-15T11:45:23.180538

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L003_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L003_R1_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:35.723122
modified: 2025-12-15T11:45:35.720362

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_germline_golden.vcf.gz/vcf
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_germline_golden.vcf.gz in schema gdi, formatted as vcf.
rights: RightsStatement
format: vcf
issued: 2025-12-15T11:45:37.914783
modified: 2025-12-15T11:45:37.911507

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://ega-archive.org/datasets/EGAD50000000276
rights: RightsStatement
format: VCF
issued: 2025-12-15T11:45:09.100493
modified: 2025-12-15T11:45:09.095519

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://healthri-acceptance.powerappsportals.com/en-US/Health-RI-data-request-form/
rights: RightsStatement
format: VCF
issued: 2025-12-15T11:30:05.407486
modified: 2025-12-15T11:30:05.402528

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_germline_golden.vcf.gz.tbi/vcf
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_germline_golden.vcf.gz.tbi in schema gdi, formatted as vcf.
rights: RightsStatement
format: vcf
issued: 2025-12-15T11:45:37.406888
modified: 2025-12-15T11:45:37.403688

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L003_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L003_R2_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:36.106317
modified: 2025-12-15T11:45:36.102508

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 20.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 20 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a702ac48-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:22.008787
modified: 2025-12-15T11:45:22.004205

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 15.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 15 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a63c2e7e-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:22.323918
modified: 2025-12-15T11:45:22.319426

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 6.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 6 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a37770a4-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:19.491651
modified: 2025-12-15T11:45:19.488527

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L001_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L001_R2_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:29.270694
modified: 2025-12-15T11:45:29.269129

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 14.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 14 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a61127d8-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:17.655926
modified: 2025-12-15T11:45:17.653321

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 2.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 2 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-9e540dee-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:21.681664
modified: 2025-12-15T11:45:21.677186

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L002_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L002_R1_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:35.009216
modified: 2025-12-15T11:45:35.006587

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Phenotypes of the individuals.
type: Distribution
description: CSV file containing phenotypes in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-faca7026-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:17.053598
modified: 2025-12-15T11:45:17.051197

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 10.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 10 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a52e055c-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:17.334793
modified: 2025-12-15T11:45:17.332285

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 18.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 18 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a6aed3c0-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:17.895463
modified: 2025-12-15T11:45:17.892757

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 8.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 8 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a483c88a-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:22.620965
modified: 2025-12-15T11:45:22.616477

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 19.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 19 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a6e64f6c-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:20.817078
modified: 2025-12-15T11:45:20.813213

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration.
license: cc-zero1.0
access URL: https://staging-download.gdi.nbis.se/dataset/GDI-MS8-COVID19.vcf
rights: RightsStatement
media type: text/vcard
issued: 2025-12-15T11:45:11.087127
issued: 2025-11-25T14:38:03.475069
modified: 2025-12-15T11:45:11.083889
modified: 2025-11-25T14:38:03.469695

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L004_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L004_R2_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:36.943989
modified: 2025-12-15T11:45:36.940915

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T.bam.bai/bai
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T.bam.bai in schema gdi, formatted as bai.
rights: RightsStatement
format: bai
issued: 2025-12-15T11:45:33.331575
modified: 2025-12-15T11:45:33.329300

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 4.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 4 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a12943f4-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:19.253336
modified: 2025-12-15T11:45:19.250298

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L003_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L003_R2_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:30.942614
modified: 2025-12-15T11:45:30.940545

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 7.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 7 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a440c3b4-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:18.463568
modified: 2025-12-15T11:45:18.460665

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L002_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L002_R1_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:29.747666
modified: 2025-12-15T11:45:29.745739

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L002_R2_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L002_R2_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:35.402741
modified: 2025-12-15T11:45:35.400077

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L001_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L001_R1_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:28.688159
modified: 2025-12-15T11:45:28.686399

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L003_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L003_R1_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:30.450691
modified: 2025-12-15T11:45:30.448828

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome X.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome X in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-8c546148-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:20.565088
modified: 2025-12-15T11:45:20.561639

Example VCF from BSC
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic Colorectal cancer cases.
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://ega-archive.org/datasets/EGAD50000000276
rights: RightsStatement
format: VCF
issued: 2025-12-15T11:45:10.191020
modified: 2025-12-15T11:45:10.186258

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 13.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 13 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a5e2c6e0-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:19.765184
modified: 2025-12-15T11:45:19.761871

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 3.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 3 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-9fc06330-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:21.357948
modified: 2025-12-15T11:45:21.354270

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-N_S02_L004_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-N_S02_L004_R1_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:31.660906
modified: 2025-12-15T11:45:31.658793

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L004_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L004_R1_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:36.503006
modified: 2025-12-15T11:45:36.499993

Data distribution for https://fairdata.dev.gdi.lu/api/fdp/distribution/gdi/SIM007-T_S04_L001_R1_001.fastq.gz/fastq
type: Distribution
description: MOLGENIS EMX2 data distribution at https://fairdata.dev.gdi.lu for table SIM007-T_S04_L001_R1_001.fastq.gz in schema gdi, formatted as fastq.
rights: RightsStatement
format: fastq
issued: 2025-12-15T11:45:34.170061
modified: 2025-12-15T11:45:34.167640

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 21.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 21 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a71afc6c-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:20.034168
modified: 2025-12-15T11:45:20.030778

GWAS and Allele Frequency Lookup Data Distribution for GDI MS8 - Population 12 (ITA), subset 1, Chromosome 17.
type: Distribution
description: VCF file containing GWAS and allele frequency lookup data of synthetic COVID-19.cases and controls for GDI MS8 demonstration. VCF for chromosome 17 in population 12 (ITA), sub1
license: https://creativecommons.org/licenses/by-sa/4.0/
access URL: https://download.gdi.biodata.pt/files/GDIF-a68b87a8-a1b5-11ef
rights: RightsStatement
issued: 2025-12-15T11:45:19.000170
modified: 2025-12-15T11:45:18.997163

LNDS
type: Agent