Dataset - CKAN

GDI-LU-D-T0001

Colorectal cancer dataset

GDI synthetic dataset (Population 11 Finland, Subgroup 2)

This dataset contains the pheno-clinical and genomic information of 42046 individuals from COVID Population 11 Finland, Subgroup 2. 2010 are affected by Phenotype 1, 2010 are...

CRG_AFBeacon_GoE_synthetic_dataset

This is a subset of the GDI MS8 synthetic dataset (COVID pop13_1) containing aggregated allele frequency (AF) statistics for variants on chr21 across 42,312 samples. It has been...

ZIP

COVID-19 GWAS and Allele Frequency Lookup Dataset for GDI MS 8

This is the first part of the split 11 of the synthetic data dedicated for the GDI MS8

https://www.iana.org/assignments/media-types/application/vcf

EOSC4Cancer Longitudinal Synthetic Colorectal Cancer Genomic data developed at BSC

The synthetic genomes have been created trying to mimic real cancer data of 4 patients (Named 185, 186, 187, and 188). Mutations are based on real CRC patients from the PCAWG...

https://publications.europa.eu/resource/authority/file-type/VCF

Exome Sequencing

All variants detected by whole exome sequencing of 2628 Dutch healthy elderly individuals

https://edamontology.org/format_3016

1+MG COVID dataset

The 1+MG COVID dataset is located at CSC's Allas service and it is available via Dylan Spalding (dylan.spalding@csc.fi) by request for the GDI project. In the future, the...

CINECA Synthetic Cohort EUROPE UK1 referencing fake samples

Please note: This synthetic data set (with cohort “participants” / ”subjects” marked with FAKE) has no identifiable data and cannot be used to make any inference about cohort...

https://publications.europa.eu/resource/authority/file-type/VCF

Tiny GoE synthetic data

Example GoE synthetic data from https://raw.githubusercontent.com/GenomicDataInfrastructure/starter-kit-synthetic-...

GoE Estonian dataset, 578 samples, pgx_pilot AF

Dataset containing 578 estonian samples of 579 after pgx_pilot AF pipeline

GoE Estonian dataset, 578 samples.

Dataset containing 578 estonian samples of 579 after AF_bcftools pipeline

CRG AFBeacon GoE synthetic dataset

CRG_AFBeacon_GoE_synthetic_dataset

http://edamontology.org/format_3016

GoE Small sample data

Slovenian small size dataset with real GoE data

1+MG COVID dataset

The 1+MG COVID dataset is located at CSC's Allas service and it is available via Dylan Spalding (dylan.spalding@csc.fi) by request for the GDI project. In the future, the...